Please consider posting the following information to the PREFIX=/home/behrouzi/cryosparc2/cryosparc2_master/deps/anaconda here’s the log from cryosparcm forcedeps cryosparcm forcedepsįorcing dependencies to be reinstalled. There are errors during dependency installs. It also comes up with fresh install of cryosparc. If cryosparc was able to start, you could also do cryosparcm backup -dir=. Although this poses no danger that we know of to any of your data or database, it’s still worthwhile to (after ensuring cryosparc is not running) make a copy of your database (you can see where the database is located in cryosparcm status as $CRYOSPARC_DB_PATH). This will automatically update to v2.8.0 and force installation of the dependencies from scratch. The simplest way to cause a forced installation of the dependencies is to run: Once you have confirmed that these are missing, please also report what you do find in the /deps folder - is the entire anaconda directory missing? This should report version 3.3.3 and both programs should be found inside the cryosparc2_master/deps/anaconda/bin/ directory.

It is definitely bundled in the v2.8 release so should have been installed if the installation completed successfully.Ĭan you double check this by doing: eval $(cryosparcm env) It appears the issue is that somehow supervisorctl is missing from the installed dependencies. Hi for the trouble - we have not seen this in our upgrade tests that we’ve been doing between 2.5 and 2.8.ĭuring the update, can you confirm that there were no error messages printed out in the terminal, especially during the process of upgrading dependencies?

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